Here’s the Deal
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When comparing ecryptfs vs S.S.E. File Encryptor, the Slant community recommends ecryptfs for most people. In the question“What are the best file encryption tools?” ecryptfs is ranked 10th while S.S.E. File Encryptor is ranked 15th. The most important reason people chose ecryptfs is:
The entire user home directory or folder inside can be encrypted and unlocked during login.
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Pros
Pro Encrypt your home directory
The entire user home directory or folder inside can be encrypted and unlocked during login.
Pro Cross-platform file-encryption
Pro Choice of strong encryption algorithms
Cons
Con No single file encryption
Can't request a single file be encrypted.
Con Not intuitive
But it works if you read the instructions.