When comparing F.lux vs MobaXterm, the Slant community recommends F.lux for most people. In the question“What are the best power user tools for Windows?” F.lux is ranked 5th while MobaXterm is ranked 27th. The most important reason people chose F.lux is:
Helps provide better sleep for more energy during the day.
Ranked in these QuestionsQuestion Ranking
Pros
Pro Can help sleep better
Helps provide better sleep for more energy during the day.
Pro Eases eye strain
Decreases color temperature at night, changing the normally fluorescent blue of an LCD monitor to a soft orange. Much easier on the eyes, especially in a low-light environment.
Pro Subtle transition
The transition from daytime to nighttime color modes takes an hour by default and will detect your current timezone, meaning that it will happen in the background at sunset, often without you noticing.
Pro Flexible
MobaXterm can connect to practically anything.
Pro X server support
In case you need X11 forwarding, MobaXterm has an integrated X server.

Pro Full linux subsystem with package manager
And you can install conda for additional package management.
Pro Tabbed or split mode
Multiple terminals can either be in tabs or split horizontally or vertically.

Pro Integral remote file editor
Edit remote files via ssh and sftp
Pro SSH tunnel controls and forwarding UI controls makes it easy
Pro Automatic SFTP
With MobaXterm, there's no fiddling with multiple apps: simply connect and everything is available.
Pro Connection manager
Pro ENV can use Windows PATH
Pro Password vault
Pro Server tools (HTTPD, SSHD, SFTPD, TTFT)

Pro Build in sftp file manager
Manipulate and edit remote files in the file browser.

Pro Integrates with WSL
Integrates perfectly with the Windows Subsystem for Linux. Out of the box it offers a shell to that system.
Pro Supports macro controls (multi commands in single screen)
Cons
Con Takes a while to get used to
After installing F.lux, the screen will look a lot more yellow. This takes about a week to fully get used to. You can ease into it by setting the color temps higher than the recommended defaults.
Con Not completely freeware
If you use MobaXterm at work, they hope you will pay for it. This isn't horrifying, but it's not providing any new features in Linux to warrant the outlay. Its integration with Putty in Windows as an X client may make it worth the funds.
Con Split screen prevents tabbed mode
If you split a screen within a tab, you have to go back to single screen before you can switch to another tab.
Con Can have some performance issues
MobaXterm can have some occasional performance issues. These happen rarely but it's worth mentioning that they exist, especially since this is a paid tool.
