When comparing Inkdrop vs Gingko, the Slant community recommends Inkdrop for most people. In the question“What are the best Markdown editors for OS X?” Inkdrop is ranked 19th while Gingko is ranked 28th. The most important reason people chose Inkdrop is:
It's useful for taking notes for programming.
Specs
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Pros
Pro Markdown with code syntax support
It's useful for taking notes for programming.
Pro You can customize colors
Pro Allows focusing on one piece of information at a time
Since Gingko documents are "trees", they are always organized on the go. And since everything is written in cards, it is possible to focus on one chunk of content at a time.
Pro Easy to overview
Despite the complexity of the tree structure, it's always clear where you are, and how to quickly add your thoughts.
Pro Markdown support
All formatting is done via Markdown.
Pro Non-linear
Non-linear notetaking allows you more flexibility, freedom and creativity.
Cons
Con Aimed at programmers, not general use
Optimized for programmers, app developers, coders. Not for storing recipes, images, videos, etc.
Con Limited free version
The free version is limited to 100 cards and 10 documents. Depending on how you use it, this might not be enough.