When comparing MobaXterm vs Ditto, the Slant community recommends Ditto for most people. In the question“What are the best power user tools for Windows?” Ditto is ranked 20th while MobaXterm is ranked 27th. The most important reason people chose Ditto is:
It just works...always. It's fast and quick, which can save you thousands of hours.
Specs
Ranked in these QuestionsQuestion Ranking
Pros
Pro Flexible
MobaXterm can connect to practically anything.
Pro X server support
In case you need X11 forwarding, MobaXterm has an integrated X server.

Pro Full linux subsystem with package manager
And you can install conda for additional package management.
Pro Tabbed or split mode
Multiple terminals can either be in tabs or split horizontally or vertically.

Pro Integral remote file editor
Edit remote files via ssh and sftp
Pro SSH tunnel controls and forwarding UI controls makes it easy
Pro Automatic SFTP
With MobaXterm, there's no fiddling with multiple apps: simply connect and everything is available.
Pro Connection manager
Pro ENV can use Windows PATH
Pro Password vault
Pro Server tools (HTTPD, SSHD, SFTPD, TTFT)

Pro Build in sftp file manager
Manipulate and edit remote files in the file browser.

Pro Integrates with WSL
Integrates perfectly with the Windows Subsystem for Linux. Out of the box it offers a shell to that system.
Pro Supports macro controls (multi commands in single screen)
Pro It's reliable, fast and quick
It just works...always. It's fast and quick, which can save you thousands of hours.
Pro Very configurable
You can set all sorts of things from size of database to size of individual clips, types of objects to copy/paste, which hotkeys to use etc.
Pro Scriptable clips
Clips can be used/changed with scripts during copy or paste.
Cons
Con Not completely freeware
If you use MobaXterm at work, they hope you will pay for it. This isn't horrifying, but it's not providing any new features in Linux to warrant the outlay. Its integration with Putty in Windows as an X client may make it worth the funds.
Con Split screen prevents tabbed mode
If you split a screen within a tab, you have to go back to single screen before you can switch to another tab.
Con Can have some performance issues
MobaXterm can have some occasional performance issues. These happen rarely but it's worth mentioning that they exist, especially since this is a paid tool.
Con Uninstaller removes nothing
After uninstalling removal of almost every file manually from different directories is still necessary since the actual uninstaller only displays "other files still remain".
Con Minimizes after each paste
You have to activate it twice to paste twice.
Con Does not support HDPI displays
On high DPI/resolution displays, the UI is very small. Practically unusable.
Con RTF bug is still present in latest Beta version
You can turn on the option to draw RTF text in the clip list, but it no longer works in Windows 10 Ditto (64bit), and the latest Beta version available today - which claims to have fixed the bug - still has the same bug. It will no longer draw RTF text as-is in the clip list.
Con The UI is very confusing
Con Can't use any shortcut you wish
Anything with spacebar, windows key (that the system also uses) is not possible.
Con Portable version will remove all clipboard record once it is updated to newer version
