When comparing MobaXterm vs AutoHotkey, the Slant community recommends AutoHotkey for most people. In the question“What are the best power user tools for Windows?” AutoHotkey is ranked 7th while MobaXterm is ranked 27th. The most important reason people chose AutoHotkey is:
Basic Stuff is very easy and even advanced programming is possible, as the language is now able to use objects and classes and has a ton of free libraries and one of the most helpful and friendly communities on the Internet.
Specs
Ranked in these QuestionsQuestion Ranking
Pros
Pro Flexible
MobaXterm can connect to practically anything.
Pro X server support
In case you need X11 forwarding, MobaXterm has an integrated X server.

Pro Full linux subsystem with package manager
And you can install conda for additional package management.
Pro Tabbed or split mode
Multiple terminals can either be in tabs or split horizontally or vertically.

Pro Integral remote file editor
Edit remote files via ssh and sftp
Pro SSH tunnel controls and forwarding UI controls makes it easy
Pro Automatic SFTP
With MobaXterm, there's no fiddling with multiple apps: simply connect and everything is available.
Pro Connection manager
Pro ENV can use Windows PATH
Pro Password vault
Pro Server tools (HTTPD, SSHD, SFTPD, TTFT)

Pro Build in sftp file manager
Manipulate and edit remote files in the file browser.

Pro Integrates with WSL
Integrates perfectly with the Windows Subsystem for Linux. Out of the box it offers a shell to that system.
Pro Supports macro controls (multi commands in single screen)
Pro Easy To Learn but extremely Powerful
Basic Stuff is very easy and even advanced programming is possible, as the language is now able to use objects and classes and has a ton of free libraries and one of the most helpful and friendly communities on the Internet.
Pro Powerful
Can interact with any Windows program / dialog / form, filling fields, submitting data, etc., without dependency on the window placement.
Pro Allows for extremely easy remapping keys and buttons on your keyboard, joystick, and mouse
You can reprogram any key combination, including the Windows key with a syntax like this one:
h::msgbox true
that automatically remaps the H key to show a message box.
Pro Can map keys to scripts
Pro Scripting of common procedures
AHK allows full scripts to be created and used, it is very flexible.
Pro Helpful forum
Pro Programming language is easier to learn and to use
Pro Good help documentation
Pro C-like syntax
C-like languages dominate the industry, making it easier to switch over to other ones in the C family.
Pro Fully programmable
With a full programming language powering the hotkeys, including GUIs, it is powerful and flexible.
Cons
Con Not completely freeware
If you use MobaXterm at work, they hope you will pay for it. This isn't horrifying, but it's not providing any new features in Linux to warrant the outlay. Its integration with Putty in Windows as an X client may make it worth the funds.
Con Split screen prevents tabbed mode
If you split a screen within a tab, you have to go back to single screen before you can switch to another tab.
Con Can have some performance issues
MobaXterm can have some occasional performance issues. These happen rarely but it's worth mentioning that they exist, especially since this is a paid tool.
Con Programming language is primitive
The base syntax, inherited from the first version of AutoIt, is primitive (a bit like an improved batch syntax).
