When comparing CLink vs MobaXterm, the Slant community recommends MobaXterm for most people. In the question“What are the best terminal emulators for Windows?” MobaXterm is ranked 6th while CLink is ranked 38th. The most important reason people chose MobaXterm is:
MobaXterm can connect to practically anything.
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Pros
Pro Transforms cmd.exe into something bearable
Cmd.exe is still irreplaceable for many tasks on Windows. This makes the experience less painful.
Pro Can easily search in history
The user can search in history by simply pressing Ctrl+R.
Pro Flexible
MobaXterm can connect to practically anything.
Pro X server support
In case you need X11 forwarding, MobaXterm has an integrated X server.
Pro Full linux subsystem with package manager
And you can install conda for additional package management.
Pro Tabbed or split mode
Multiple terminals can either be in tabs or split horizontally or vertically.
Pro Integral remote file editor
Edit remote files via ssh and sftp
Pro SSH tunnel controls and forwarding UI controls makes it easy
Pro Automatic SFTP
With MobaXterm, there's no fiddling with multiple apps: simply connect and everything is available.
Pro Connection manager
Pro ENV can use Windows PATH
Pro Password vault
Pro Server tools (HTTPD, SSHD, SFTPD, TTFT)
Pro Build in sftp file manager
Manipulate and edit remote files in the file browser.
Pro Integrates with WSL
Integrates perfectly with the Windows Subsystem for Linux. Out of the box it offers a shell to that system.
Pro Supports macro controls (multi commands in single screen)
Cons
Con Supports cmd.exe not the successor platform
It's for cmd.exe which was abandoned by Microsoft in the favor of PowerShell. Using PowerShell is more effective than cmd.exe even with CLink, unfortunatelly.
Con Not completely freeware
If you use MobaXterm at work, they hope you will pay for it. This isn't horrifying, but it's not providing any new features in Linux to warrant the outlay. Its integration with Putty in Windows as an X client may make it worth the funds.
Con Split screen prevents tabbed mode
If you split a screen within a tab, you have to go back to single screen before you can switch to another tab.
Con Can have some performance issues
MobaXterm can have some occasional performance issues. These happen rarely but it's worth mentioning that they exist, especially since this is a paid tool.