When comparing Fusion Character Animator vs Tiled, the Slant community recommends Fusion Character Animator for most people. In the question“What are the best 2D animation tools for game development?” Fusion Character Animator is ranked 6th while Tiled is ranked 9th. The most important reason people chose Fusion Character Animator is:
Sprite art can be edited within FCA with paint/draw, tint and scaling tools.
Specs
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Pros

Pro Editor module
Sprite art can be edited within FCA with paint/draw, tint and scaling tools.

Pro Requires no knowledge of sprite animation
FCA provides a collection of pre-built animations, and only requires the user to supply images for each body part.

Pro Works with most popular game engines
Fusion Character Animator is compatible with MMF2, Fusion 2.5, Scirra Construct, GameDev, RPGMaker VX Ace, Game Maker and Unity 2D.

Pro Pixelate Me for retrogaming
Sprites can be automatically reduced and pixelated, with additional control over the color palette.
Pro Easy to manage generated pictures and folder
Export file manager can manager or erase easily generated pictures.
Pro Multi-platform
Not everyone uses the same operating system and why should they? Tiled supports Windows, Mac, and Linux so you can work in any environment you like. Also with daily builds you get to stay ahead of the curve!
Pro Free and open-source
Using the GPL license means you get to use this software free and are free to make changes to it as you see fit.
Pro Unlimited layers
Sometimes you need 20 layers to make something epic. Tiled lets you create as many layers as you need.
Pro Use shell commands
Setup shell commands within Tiled so you can setup workflows for each of your games.
Pro Supports Orthographic and Isometric tiles
Whether you want a straight on look at your world or a slightly skewed one Tiled has you covered.
Pro Terrains
Setup boarders with your tilesets so making tiles provide the correct connections automatically. This feature will speed up your level creation.
Pro Auto-mapping
One of the coolest things is to create rules so you can automate the mapping process. Want to have certain tiles to always have a collider? Simply make a rule for it and it'll do it automatically. Speed up your mapping process with this feature.
Pro Many engines already have support
A big list of engines already have support for Tiled provided by those in the community. See if the engine you use is already on the list.
Pro Can create colliders and triggers within editor
Tiled makes it easy to setup triggers and colliders with its vector tools or you can set up a tile that’s invisible in your game. Change collider/trigger properties so you can access them within your game.
Pro Tile size and image size do not have to match
Want to import a giant object but don’t want to split it up? Import it and place it the exact size you want it as one object.
Pro Properties
Create properties for your map, layers, tilesets, tiles, and objects. Have the flexibility you need to create the best levels for your game.
Pro Engine agnostic
Tiled provides an easy solution for tile maps for any engine even the custom engine you are now making. This makes Tiled a very versatile tool for 2D games.
Cons

Con Basic tool
The program is not a powerful tool, you can only choose from a small selection of pre-set animations and pre-drawn sprites.

Con Humanoid sprites only
FCA uses a single human-shaped skeletal model, and all the provided animations are for human movement.
Con Must implement .tmx if your engine doesn’t support Tiled.
It’s not a huge deal but you do need to implement Tiled into your engine if you don’t have it. Don't be lazy just follow this guideline to get your game running. Must implement .tmx if your engine doesn’t support Tiled.
