When comparing Evince vs Atril, the Slant community recommends Atril for most people. In the question“What are the best PDF viewers for UNIX-like systems?” Atril is ranked 2nd while Evince is ranked 4th. The most important reason people chose Atril is:
It is a straight port of the GNOME2 Evince to GTK3 without sacrificing its UI like Evince 3 did. It also has all the cool stuff that professional apps need, like: Menubars, editable Toolbars, Menus with Icons, Menus with keyboard shortcuts.
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Pros
Pro Can annotate a pdf
It isn't immediately obvious how to do this, but the instructions are here.
As of 13 June 2018, the icons/screenshots on that page look different than what can be seen under Evince v3.18.2, but the devs have been alerted to this discrepancy, and there are requests they make the finding/using of annotations more intuitive than they are now.
Pro Search results list
Click/tap the magnifying class in the top bar.
Pro Good SEARCH
Evince remained my preferred viewer due to the excellent presentation of results in the whole document when performing a search. It is so good, that it makes me tolerate the silly "hamburger" (CSD) foolishness.
Pro Link preview on hover
Evince shows a popup with the preview of the target of links in the same document. This is extremely useful e.g. for links to the bibliography or for references to definitions/propositions/equations in math texts.
Pro Free and open source software
Pro Can find a word in a pdf
Pro Supports touchpad gestures
Pro Good integration with Gnome desktop
Pro Supports touch interaction
Supports touch, including drag and pinch to zoom.
Pro Can play embedded video
To my knowlegde, the only PDF reader on Linux that can play embeded video (unfortunately not in presentation mode, which is a major drawdack).
Pro No GNOME3
It is a straight port of the GNOME2 Evince to GTK3 without sacrificing its UI like Evince 3 did. It also has all the cool stuff that professional apps need, like: Menubars, editable Toolbars, Menus with Icons, Menus with keyboard shortcuts.
Pro Great Evince fork
It has been forked when Evince was still good.
Cons
Con Keyboard shortcuts cannot be rebound
Con Scrolling is not smooth
Con Adding annotations isn't as intuitive as it should be
Instructions can be found here. Specifically, a user should be able to select a word or block of text, then right-click and see highlight/add note options in the drop-down menu. Currently, this option isn't available (as of Evince v3.18.2 / 13th June 2018).
Con Poor UI
Since version 3 it is almost unusable.
Con Can't delete pages
No Hand Tool. Automatic Zoom broken.
You have to boot in to windows to have a decent PDF reader.
Con Bugs that never get fixed
Irritating bugs that never get fixed (such as starting scrolling randomly when moving mouse around) and devs that don't care.
Con Tied to GNOME
Comes with all those weird things like popovers and clientside windows.
Con Slow to open PDFs
Con CSD - Why do you need to search for stuff you know is there... somewhere.
MS thought it was smart to remove "Start" buttons. With CSD, devs thought it would be good for productivity to play hide and seek with standard functions. And Evince regrettably is also riding that wave. It is that Evince has a superior (whole document) search result presentation and that its function is pretty simple and straight forward (read, search), that it makes me tolerate the silly "hamburger" (CSD) foolishness. If Atril (no CSD) would have similar search result output, a switch over would be just one heartbeat away...
Con Window can't be resized
You can only read in a small box or fullscreen, no way to manually size window.
Con Thumbs not working
Scroll once, and all thumbs in the side panel are gone.
Con Unicode problems
Some languages other than English do not render correctly.
Con Disappointing search
In comparison with its origin, Evince, the search results in Atril is disappointing. You can search, but only locates your search term per page, the one you're located on. Want to find it elsewhere? Search all pages one by one, page by page. Hence, I personally, working/ searching in large pdfs, therefore prefer Evince, which does give you the search result for the whole document. Apart from this, Atril seems a great piece of (fork) work.
Con Some GTK dependecy
It needs GTK+ and its dependencies.