When comparing PuTTY vs hyper, the Slant community recommends PuTTY for most people. In the question“What are the best terminal emulators for Windows?” PuTTY is ranked 7th while hyper is ranked 15th.
Ranked in these QuestionsQuestion Ranking
Pro De facto standard client for SSH, Telnet and Rlogin
PuTTY is one of the oldest and most popular clients. It has earned the trust of a great number of users over a long period by being reliable, offering useful features and helpful support. It got into the 15 Essential Open Source Tools for Windows Admins list by InfoWorld.
Pro Source code available
Full source available. Compile and modify it yourself.
Pro Can be used on any Windows computer, even without admin rights
Pro Lightweight and portable
Doesn't require much resources (memory and hard-disk). Can even be run on a system by just downloading without install.
Pro Cross-platform due to electron browser-based foundation
Pro Built on electron, supports split panels and plugins
Con Can not save passwords
Anyway, you can use "PuTTYgen" to generate a key pair, then use "Pageant" to do a password-less SSH remote login.
Con Lacks features
It is JUST an SSH client. There are many other options with built in X-servers, Multitabbing, etc.
Con Ugly design, too simple
Con Tedious logging/tracing
Its tedious to set up logging and tracing (e.g. for serial connections).
Con No global settings
If you want to change a setting for all your connections, you'd have to do it individually.
Con No login scripting
Con Made with Electron
It uses a considerable amount of resources, compared to other offerings.
Con Incorrect rendering
Terminal window has visual artifacts.
Con No configuration UI; all options must be set via JSON
Con Still maturing as of December 2016
Folks noticed some issues in the 1.0 release cited here.