When comparing MobaXterm vs FileZilla, the Slant community recommends MobaXterm for most people. In the question“What are the best SSH clients for Windows?” MobaXterm is ranked 7th while FileZilla is ranked 16th. The most important reason people chose MobaXterm is:
MobaXterm can connect to practically anything.
Specs
Ranked in these QuestionsQuestion Ranking
Pros
Pro Flexible
MobaXterm can connect to practically anything.
Pro X server support
In case you need X11 forwarding, MobaXterm has an integrated X server.
Pro Full linux subsystem with package manager
And you can install conda for additional package management.
Pro Tabbed or split mode
Multiple terminals can either be in tabs or split horizontally or vertically.
Pro Integral remote file editor
Edit remote files via ssh and sftp
Pro SSH tunnel controls and forwarding UI controls makes it easy
Pro Automatic SFTP
With MobaXterm, there's no fiddling with multiple apps: simply connect and everything is available.
Pro Connection manager
Pro ENV can use Windows PATH
Pro Password vault
Pro Server tools (HTTPD, SSHD, SFTPD, TTFT)
Pro Build in sftp file manager
Manipulate and edit remote files in the file browser.
Pro Integrates with WSL
Integrates perfectly with the Windows Subsystem for Linux. Out of the box it offers a shell to that system.
Pro Supports macro controls (multi commands in single screen)
Pro Secure FTP support (FTPS/SFTP)
Supports FTP, FTPS (SSL) and SFTP (SSH).
Pro Free and open source
FileZilla is free open-source software distributed under the terms of the GNU General Public License free of charge. Basically this means that everyone, including corporate entities, can use FileZilla, including but not limited to private, educational and commercial use.
Pro Offers Server Mode
Can be used as an FTP server also, allowing easy file sharing.
Pro Cross-platform
In addition to Windows, FileZilla client is available for Unix, OSX and Linux.
Pro Suppots FTP and FTPS
FileZilla Server is a server that supports FTP and FTP over SSL/TLS which provides secure encrypted connections to the server.
Pro Kind of de-facto standard
If you're troubleshooting things, everybody will first try if it works with File-Zilla.
Cons
Con Not completely freeware
If you use MobaXterm at work, they hope you will pay for it. This isn't horrifying, but it's not providing any new features in Linux to warrant the outlay. Its integration with Putty in Windows as an X client may make it worth the funds.
Con Split screen prevents tabbed mode
If you split a screen within a tab, you have to go back to single screen before you can switch to another tab.
Con Can have some performance issues
MobaXterm can have some occasional performance issues. These happen rarely but it's worth mentioning that they exist, especially since this is a paid tool.
Con Installs junk software on your computer
The installer will install adware by default.