When comparing Toodledo vs Joplin, the Slant community recommends Joplin for most people. In the question“What are the best cross-platform task apps?” Joplin is ranked 5th while Toodledo is ranked 23rd.
Specs
Ranked in these QuestionsQuestion Ranking
Pros

Pro Can create to-do items via email
It's possible to create a to-do item by sending or forwarding an email.
Pro Decent filtering and sorting
Pro Priority organizing
Pro Great GTD implementation
The GTD principles are very perfectly supported by Toodledo.
Pro Functionality-rich
Integrated sharing, note taking, habit tracking, and outlining make this a more powerful tool than a simple list of to-dos.
Pro Upload From CSV
Quickly upload an excel (CSV) file template of tasks to a folder for complex but repeating projects.
Pro Well documented, free-to-use JSON API
If you adopt Toodledo as your productivity system, you can be confident that you can extend it to fit your needs with this programmatic access.
Pro Can tag items
Pro Space to add lengthy text
Notes area that can then be hidden.

Pro Sends a daily email reminder
Toodledo reminds you via email of the tasks on your plate for the day.
Pro Apple Watch support
Integrated support for Apple Watch lets you check on your to-dos on the run.
Pro Offline access
Pro Open source
Peace of mind that there is no malicious piece of software in the app.
Pro Encryption
Pro Cross-platform
Supports Windows, Mac, Linux, Android and iOS.
Pro Supports file attachments
Pro Supports markdown
Pro Supports tags for notes
Pro Web Clipper
Browser extension saves full pages, clean content, or screen selections to new notes.
Pro Optional CLI interface
Provides a CLI interface for terminal lovers.

Pro Supports multiple languages
English, French, and Spanish, Italian, German, Czech and many others.
Pro Active user forum with support from app creators
Support, troubleshooting, and new feature requests are easy to make at the user forum and you can contact the app creator directly.
Pro Dropbox support
Can sync using Dropbox.
Pro Nextcloud support
Pro Timed alarm reminder for to-do lists
Cons
Con Free version limited to 20 folders
Con Android app has annoying notifications
Whenever the app fails a background sync action for any reason (server issues, lack of internet connection, etc.), a notification appears.
Con Good as a starting point
Toodledo is a good starting point, but is essentially the same as an Excel spreadsheet where you have to build your workflow via the saved searches.
Con Sync issues with Android
If update on Linux then sync on Android, sometimes the Android sync will duplicate or remove some journal notes. Seems to be a bug in the Android app. The Linux app alone without sync with Android seems to work well using Dropbox. But don't expect changes you make on Android to sync properly back to Linux.
Con Sync issue under Linux
The Linux client has a bug that requires the user to click the mouse frequently in order for sync to proceed. This bug has been open for a while.
Con Gargantuan memory footprint
1GB+ of memory for taking notes.
Con Old school interface
Con Bloated
This project is suffering from feature creep and uses a lot of memory for a note-taking app.
Con App Image launches very slowly
On Linux, you can only install via App Image, which take 5+ seconds to launch. I can launch LibreOffice in under two seconds.
Con Sync issues on Windows
No way to change account settings and sync easily corrupted.
Con Weak tag searching
Joplin can currently only search for a single tag at a time. None of the boolean operators (AND, OR, NOT) are available for use in searches. This greatly diminishes the usefulness of tags in Joplin.
Con Can't create tags from the mobile app
