When comparing Org-mode vs Checkvist, the Slant community recommends Org-mode for most people. In the question“What is the best cross-platform note-taking app?” Org-mode is ranked 1st while Checkvist is ranked 42nd. The most important reason people chose Org-mode is:
Org-mode is characterized by a flexible and versatile system with adaptability to different workflows, making it comparable as an Evernote alternative. It is at once simple and complex., which helps it to compete as an Evernote alternative.
Specs
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Pros
Pro Very flexible
Org-mode is characterized by a flexible and versatile system with adaptability to different workflows, making it comparable as an Evernote alternative. It is at once simple and complex., which helps it to compete as an Evernote alternative.
Pro Built-in agenda
Org-mode has some built-in agenda functionality. You can schedule tasks and assign various degrees of importance to each of them. Org-mode agenda can also be synced with Google Calendar.
Pro Versioning can be tracked and synced using Git or other VCS
Org files are plain text, and lend themselves well to version control. Emacs also has good integrations for various VCS.
Pro Great sync support
Notes and to-dos can be synced with Trello, Toodledo, Simplenote, Orgmobile, or with tools like Git on Github, Dropbox, Google Drive, and Bitbucket, while WebDAV (with iOS and Android) can also be exported to PDF, mind map, LaTeX, HTML, Docbook, or txt.
Pro Basic spreadsheet functionality
Org-mode has some basic spreadsheet functionality. Other than auto-formatting ASCII tables (a notoriously annoying problem), it also has support for LISP-like syntax to define equations or any other functionality that can be achieved through spreadsheets.
Pro Out-of-the-box Latex support
Org-mode has out-of-the-box support for Latex: it can immediately parse equations (or other Latex markup) and can even compile notes to PDF or HTML.
Pro As simple or as complex as you need
Checkvist hits a sweet spot between minimal and complexity. It gives you a host of options and extras to use on your lists, but you can completely ignore them if you don't need them and keep it very simple. This makes Checkvist a one-stop shop, regardless of what type of 'list' you need.
Pro Tasks can be managed with custom tags
Pro vim-like commands
Pro Convenient search by text or tag filtering
Pro Converts incoming emails to todos - this is a way to enter tasks from anywhere.
Pro Great search
Search filters help you search for tasks by tag, due date, assignee, etc.
Pro Very flexible
To-do lists often need to be grouped and regrouped for clarity. The outline-based nature of Checkvist makes it easy to move things across categories, to increase and decrease priority, etc.
Pro Smart parsing of items
Parses markdown, html links, hashtags to become formatted text, clickable links, and tags, respectively.
Pro Generous set of free features
Checkvist offers many free features if you are using this individually.
Pro Supports comments on tasks
Any item can have a free-text comment, which can be shown or hidden as desired.
Cons
Con Difficult to learn
Org-mode has a difficult learning curve since you have to learn all the keybindings and commands. It's especially difficult if you are not used to Emacs.
Con Limited capability in the android app
Checkvist is primarily a web interface.